{"id":79,"date":"2021-04-03T00:41:55","date_gmt":"2021-04-03T04:41:55","guid":{"rendered":"http:\/\/saimalab.com\/?page_id=79"},"modified":"2026-02-12T13:52:45","modified_gmt":"2026-02-12T17:52:45","slug":"softwares","status":"publish","type":"page","link":"https:\/\/saimalab.com\/index.php\/softwares\/","title":{"rendered":"Resources"},"content":{"rendered":"\n<ul class=\"wp-block-list has-blue-color has-text-color has-medium-font-size\">\n<li><a href=\"http:\/\/dx.doi.org\/10.17504\/protocols.io.bmbik2ke\" target=\"_blank\" rel=\"noreferrer noopener\">SHARE-seq V1 step-by-step protocol<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/masai1116\/SHARE-seq-alignmentV2\/\" target=\"_blank\" rel=\"noreferrer noopener\" title=\"\">SHARE-seq alignment pipeline v2.0<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/masai1116\/SHARE-seq-alignment\" target=\"_blank\" rel=\"noreferrer noopener\" title=\"https:\/\/github.com\/masai1116\/SHARE-seq-alignment\">SHARE-seq alignment pipeline v1.0<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/buenrostrolab.shinyapps.io\/lungATAC\/\" target=\"_blank\" rel=\"noreferrer noopener\">scATAC lung tumor atlas<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/buenrostrolab.shinyapps.io\/skinnetwork\/\" target=\"_blank\" rel=\"noreferrer noopener\">SHARE-seq skin network<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/buenrostrolab\/stimATAC_analyses_code\" target=\"_blank\" rel=\"noreferrer noopener\" title=\"Functional Inference of Gene Regulation (FigR)\">Functional Inference of Gene Regulation (FigR)<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/masai1116\/fastDORC\" target=\"_blank\" rel=\"noreferrer noopener\" title=\"fastDORC for identifying peak-gene association\">fastDORC for identifying peak-gene association<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/buenrostrolab.shinyapps.io\/stimFigR\/\" target=\"_blank\" rel=\"noreferrer noopener\" title=\"https:\/\/buenrostrolab.shinyapps.io\/stimFigR\/\">PBMC stimulation data exploration<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/www.protocols.io\/view\/me-seq-protocol-v1-a-single-cell-trimodal-assay-5qpvowmwxl4o\/v1\" target=\"_blank\" rel=\"noopener\" title=\"ME-seq step-by-step protocol\">ME-seq step-by-step protocol<\/a><\/li>\n\n\n\n<li><a href=\"https:\/\/github.com\/spiderzbh\/ME-seq-alignment-pipeline\" target=\"_blank\" rel=\"noopener\" title=\"ME-seq alignment pipeline\">ME-seq alignment pipeline<\/a><\/li>\n<\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":7,"comment_status":"closed","ping_status":"closed","template":"template-full-width-page.php","meta":{"_eb_attr":"","om_disable_all_campaigns":false,"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-79","page","type-page","status-publish","hentry"],"aioseo_notices":[],"aioseo_head":"\n\t\t<!-- All in One SEO 4.9.9 - aioseo.com -->\n\t<meta name=\"description\" content=\"SHARE-seq V1 step-by-step protocol SHARE-seq alignment pipeline v2.0 SHARE-seq alignment pipeline v1.0 scATAC lung tumor atlas SHARE-seq skin network Functional Inference of Gene Regulation (FigR) fastDORC for identifying peak-gene association PBMC stimulation data exploration ME-seq step-by-step protocol ME-seq alignment 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